Fixes resolVI.

[canergen]

Several bug fixes for reported issues.

#3283
#3208
#3289
#3267

[codecov]

Codecov Report

Attention: Patch coverage is 64.28571% with 5 lines in your changes missing coverage. Please review.

Project coverage is 80.40%. Comparing base (17da5f7) to head (20ab137).
Report is 4 commits behind head on main.

Files with missing lines	Patch %	Lines
src/scvi/external/resolvi/_model.py	66.66%	3 Missing ⚠️
src/scvi/external/resolvi/_utils.py	60.00%	2 Missing ⚠️

❗ There is a different number of reports uploaded between BASE (17da5f7) and HEAD (20ab137). Click for more details.

HEAD has 9 uploads less than BASE

Flag	BASE (17da5f7)	HEAD (20ab137)
	12	3

Additional details and impacted files

@@            Coverage Diff             @@
##             main    #3308      +/-   ##
==========================================
- Coverage   86.63%   80.40%   -6.23%     
==========================================
  Files         193      193              
  Lines       17130    17133       +3     
==========================================
- Hits        14840    13776    -1064     
- Misses       2290     3357    +1067     

Files with missing lines	Coverage Δ
src/scvi/external/resolvi/_module.py	95.51% <ø> (+2.41%)	⬆️
src/scvi/external/resolvi/_utils.py	86.39% <60.00%> (+22.48%)	⬆️
src/scvi/external/resolvi/_model.py	91.66% <66.66%> (-1.07%)	⬇️

... and 27 files with indirect coverage changes

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[ori-kron-wis]

maybe better to add a changlog