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@seqan

SeqAn

SeqAn is an open source C++ library of efficient algorithms and data structures for the analysis of sequences with the focus on biological data.

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  1. seqan3 Public

    The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.

    C++ 426 83

  2. seqan Public

    SeqAn's official repository.

    C++ 489 171

Repositories

Showing 10 of 48 repositories
  • needle Public

    A fast and space-efficient pre-filter for estimating the quantification of very large collections of nucleotide sequences

    C++ 14 6 7 1 Updated May 6, 2025
  • seqan3 Public

    The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.

    C++ 426 83 30 1 Updated May 5, 2025
  • raptor Public

    A fast and space-efficient pre-filter for querying very large collections of nucleotide sequences.

    C++ 52 18 8 4 Updated May 5, 2025
  • chopper Public

    A tool for partitioning a set of sequences into similar batches.

    C++ 9 BSD-3-Clause 9 6 2 Updated May 5, 2025
  • sharg-parser Public

    The modern argument parser for c++ tools

    C++ 11 7 15 4 Updated May 5, 2025
  • app-template Public template

    This template comes pre-configured with various SeqAn libraries and a basic Continuous Integration setup. It is designed to provide a robust starting point for your projects, while offering the flexibility to customize and adapt to your specific requirements.

    CMake 6 9 19 0 Updated May 5, 2025
  • hibf Public

    HIBF and IBF

    C++ 4 3 5 5 Updated May 5, 2025
  • ibf-fpga Public

    Mirror of https://git.zib.de/hpc-research/Projects/seqanatfpga/min-ibf-fpga-oneapi

    C++ 1 0 0 0 Updated Apr 24, 2025
  • sahara Public

    Approximate Pattern Matching with Search Schemes

    C++ 0 1 1 1 Updated Apr 21, 2025
  • ScavengerHunt Public

    Unix Scavenger Hunt

    Shell 0 4 0 0 Updated Apr 15, 2025
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