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[ ![ CI] ( https://github.com/sgkit-dev/vcztools/actions/workflows/ci.yml/badge.svg?branch=main )] ( https://github.com/sgkit-dev/vcztools/actions/workflows/ci.yml )
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+ [ ![ PyPI Downloads] ( https://static.pepy.tech/badge/vcztools )] ( https://pepy.tech/projects/vcztools )
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# vcztools
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Partial reimplementation of bcftools for [ VCF Zarr] ( https://github.com/sgkit-dev/vcf-zarr-spec/ )
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```
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vcztools view <path.vcz>
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```
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- or
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+ or
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```
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python -m vcztools view <path.vcz>
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```
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- should be equivalent to running
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+ should be equivalent to running
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```
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bcftools view <path.vcf.gz>
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```
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- See the [ bio2zarr] ( https://sgkit-dev.github.io/bio2zarr/ ) project for help in
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+ See the [ bio2zarr] ( https://sgkit-dev.github.io/bio2zarr/ ) project for help in
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converting VCF files to Zarr.
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## Goals
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Vcztools aims to be a drop-in replacement for a subset of bcftools functionality.
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Currently supported are the `` view `` , `` query `` and `` index -s/-n `` commands.
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- We aim for 100% compatibility so if you notice a difference between the output of
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+ We aim for 100% compatibility so if you notice a difference between the output of
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vcztools and bcftools please do open an issue.
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## Cloud stores
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## Development
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- Vcztools is under active development and contributions are warmly welcomed. Please
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+ Vcztools is under active development and contributions are warmly welcomed. Please
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see the project on [ GitHub] ( https://github.com/sgkit-dev/vcztools ) .
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