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@shapirolab

Shapiro Lab

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  1. clineage clineage Public

    Python 11 3

  2. Logix Logix Public

    C++ 1

  3. eSTGt eSTGt Public

    eSTGt: A programming and simulation environment for population dynamics

    MATLAB 2

  4. epichain epichain Public

    Python

  5. Efcp Efcp Public

    C

  6. embryonic-estg embryonic-estg Public

    Forked from ofirr/mouse-estg

    eSTG scripts for sparse simulation of embryonic development

    MATLAB

Repositories

Showing 10 of 11 repositories
  • LineagePlotter Public Forked from yaaraneumeier/LineagePlotter

    Visual Presentation of Lingeage Phylogenetic trees

    shapirolab/LineagePlotter’s past year of commit activity
    Jupyter Notebook 0 1 0 0 Updated Jun 5, 2023
  • clineage Public
    shapirolab/clineage’s past year of commit activity
    Python 11 3 0 5 Updated Apr 21, 2023
  • clineage_snakemake Public

    snakemake pipeline for STR-targeting duplex mips panel

    shapirolab/clineage_snakemake’s past year of commit activity
    0 0 0 0 Updated Mar 23, 2023
  • str_mip_mapping Public

    minimal mapping example for STR-targeting duplex mips panel

    shapirolab/str_mip_mapping’s past year of commit activity
    0 0 0 0 Updated Mar 23, 2023
  • stutter_genotyping Public

    minimal example of STR stutter genotyping"

    shapirolab/stutter_genotyping’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Mar 15, 2023
  • clineage-simulation Public Forked from ofirr/clineage-simulation

    This simulates cell lineage using eSTGt, reconstructs the lineage tree based on the mutation table generated by the simulation, and finally outputs various comparison metrics between the simulation and reconstruction.

    shapirolab/clineage-simulation’s past year of commit activity
    MATLAB 0 1 0 0 Updated Aug 25, 2022
  • embryonic-estg Public Forked from ofirr/mouse-estg

    eSTG scripts for sparse simulation of embryonic development

    shapirolab/embryonic-estg’s past year of commit activity
    MATLAB 0 1 0 0 Updated Aug 25, 2022
  • eSTGt Public

    eSTGt: A programming and simulation environment for population dynamics

    shapirolab/eSTGt’s past year of commit activity
    MATLAB 0 2 3 0 Updated Aug 25, 2022
  • Logix Public
    shapirolab/Logix’s past year of commit activity
    C++ 1 0 0 0 Updated Jun 30, 2020
  • Efcp Public
    shapirolab/Efcp’s past year of commit activity
    C 0 0 0 0 Updated Jun 29, 2020
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