chore: update to stable snakemake

[johanneskoester]

Summary by CodeRabbit

• Chores
  • Updated the dependency specification for the snakemake package to ensure a stable version (8.20.0) is used, enhancing the reliability of the environment.

[coderabbitai]

Walkthrough

The change involves updating the dependency specification for the snakemake package in the pyproject.toml file. The previous configuration sourced snakemake directly from a Git repository, while the updated configuration specifies that version 8.20.0 should be used. This modification shifts from a direct Git reference to a versioned release.

Changes

Files	Change Summary
pyproject.toml	Updated snakemake dependency from Git repository to version 8.20.0.

Sequence Diagram(s)

sequenceDiagram
    participant User
    participant DependencyManager
    participant GitRepo
    participant PackageRepo

    User->>DependencyManager: Request for snakemake
    alt Old Configuration
        DependencyManager->>GitRepo: Fetch latest commit
        GitRepo-->>DependencyManager: Return latest snakemake
    else New Configuration
        DependencyManager->>PackageRepo: Fetch version 8.20.0
        PackageRepo-->>DependencyManager: Return snakemake 8.20.0
    end
    DependencyManager-->>User: Provide snakemake

Loading

Poem

🐇 In the garden where I hop and play,
A change has come to brighten the day!
From Git's wild branches, we now take flight,
With version 8.20.0, everything feels right!
Hooray for stability, let’s dance and cheer,
For a smoother journey throughout the year! 🌼

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[coderabbitai]

Actionable comments posted: 0

Review details

Configuration used: .coderabbit.yaml
Review profile: CHILL

Commits

Files that changed from the base of the PR and between c414f65 and 05309b0.

Files selected for processing (1)

• pyproject.toml (1 hunks)

Additional comments not posted (1)

pyproject.toml (1)

28-28: Approve the dependency update but verify compatibility.

The update from a Git repository to a specific version (8.20.0) of snakemake is a positive change for stability and reproducibility. However, it's crucial to ensure that this version is compatible with other dependencies and the overall project requirements.

Run the following script to verify the compatibility of snakemake version 8.20.0 with other dependencies:

[cmeesters]

oh, hm, why is there now an explicit version instead of the URI?

[johanneskoester]

Fix incoming: snakemake/snakemake#3077

[johanneskoester]

The test still failed...

[johanneskoester]

Why the merge already?

[johanneskoester]

The fix is not yet released.

[cmeesters]

Why the merge already?

The change is merely in the toml, pointing to an existing snakemake release.