Add DOI badge

README.Rmd

@@ -1,15 +1,15 @@
 ---
 output: 
-  pdf_document:
-    extra_dependencies: ["float"]
   github_document:
     pandoc_args: --webtex
     # --webtex=https://latex.codecogs.com/png.latex?%5Cdpi{150}
+  pdf_document:
+    extra_dependencies: ["float"]
 header-includes:
    - \usepackage[default]{sourcesanspro}
    - \usepackage[T1]{fontenc}
-bibliography: inst/references/references.bib
-cls: inst/references/proceedings-of-the-royal-society-a.csl
+bibliography: documentation/codos/inst/references/references.bib
+cls: documentation/codos/inst/references/proceedings-of-the-royal-society-a.csl
 ---
 <!-- README.md is generated from README.Rmd. Please edit that file -->
 
@@ -25,12 +25,13 @@ knitr::opts_chunk$set(
 ```
 
 # CO<sub>dos</sub>: CO<sub>2</sub> Correction Tools 
-<!-- <img src="inst/images/logo.png" alt="logo" align="right" height=200px/> -->
+<!-- <img src="documentation/codos/inst/images/logo.png" alt="logo" align="right" height=200px/> -->
 
 <!-- badges: start -->
 `r if(!knitr::is_latex_output()) badger::badge_devel("special-uor/codos", "yellow")`
 `r if(!knitr::is_latex_output()) badger::badge_cran_release("codos", "black")`
 `r if(!knitr::is_latex_output()) badger::badge_github_actions("special-uor/codos")`
+`r if(!knitr::is_latex_output()) badger::badge_doi("10.5281/zenodo.5083309", "blue")`
 <!-- badges: end -->
 
 ## Installation
@@ -226,8 +227,8 @@ exp_mod <- nls(vpd ~ a * exp(kTmp * Tmp - kMI * MI),
 ```
 
 Summary statistics:
-```{r, echo = FALSE}
-df <- read.csv("inst/extdata/df.csv")
+```{r, echo = FALSE, eval = FALSE}
+df <- read.csv("documentation/codos/inst/extdata/df.csv")
 # Linear approximation
 lmod <- lm(log(vpd) ~ Tmp + MI, data = df)
 # Non-linear model
@@ -239,7 +240,7 @@ exp_mod <- nls(vpd ~ a * exp(kTmp * Tmp - kMI * MI),
                control = list(maxiter = 200))
 ```
 
-```{r}
+```{r, eval = FALSE}
 summary(exp_mod)
 coefficients(exp_mod)
 ```

README.md

@@ -7,14 +7,15 @@
 
 # CO<sub>dos</sub>: CO<sub>2</sub> Correction Tools
 
-<!-- <img src="inst/images/logo.png" alt="logo" align="right" height=200px/> -->
+<!-- <img src="documentation/codos/inst/images/logo.png" alt="logo" align="right" height=200px/> -->
 
 <!-- badges: start -->
 
 [![](https://img.shields.io/badge/devel%20version-0.0.1-yellow.svg)](https://github.com/special-uor/codos)
 [![](https://www.r-pkg.org/badges/version/codos?color=black)](https://cran.r-project.org/package=codos)
 [![R build
 status](https://github.com/special-uor/codos/workflows/R-CMD-check/badge.svg)](https://github.com/special-uor/codos/actions)
+[![](https://img.shields.io/badge/doi-10.5281/zenodo.5083309-blue.svg)](https://doi.org/10.5281/zenodo.5083309)
 <!-- badges: end -->
 
 ## Installation
@@ -250,24 +251,7 @@ Summary statistics:
 
 ``` r
 summary(exp_mod)
-#> 
-#> Formula: vpd ~ a * exp(kTmp * Tmp - kMI * MI)
-#> 
-#> Parameters:
-#>      Estimate Std. Error t value Pr(>|t|)    
-#> a    4.589148   0.019843   231.3   <2e-16 ***
-#> kTmp 0.061108   0.000174   351.2   <2e-16 ***
-#> kMI  0.870229   0.002585   336.7   <2e-16 ***
-#> ---
-#> Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
-#> 
-#> Residual standard error: 2.241 on 60291 degrees of freedom
-#> 
-#> Number of iterations to convergence: 8 
-#> Achieved convergence tolerance: 7.419e-06
 coefficients(exp_mod)
-#>          a       kTmp        kMI 
-#> 4.58914835 0.06110768 0.87022950
 ```
 
 ### Corrected `mi` from reconstructed `mi`