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Updated the remaining Snomed codes from the discussion with Dylan and Carlos #1559

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Updated the remaining Snomed codes from the discussion with Dylan and Carlos #1559

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4 changes: 2 additions & 2 deletions src/main/resources/modules/allergies.json
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Expand Up @@ -261,8 +261,8 @@
"codes": [
{
"system": "SNOMED-CT",
"code": 419199007,
"display": "Allergy to substance (finding)"
"code": "609328004",
"display": "Allergic disposition (finding)"
}
],
"reactions": [],
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28 changes: 14 additions & 14 deletions src/main/resources/modules/breast_cancer.json
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Expand Up @@ -574,8 +574,8 @@
"direct_transition": "Stage III",
"value_code": {
"system": "SNOMED-CT",
"code": 261639007,
"display": "Stage 3B (qualifier value)"
"code": "1222805004",
"display": "American Joint Committee on Cancer stage IIIB (qualifier value)"
}
},
"IIIA": {
Expand Down Expand Up @@ -725,8 +725,8 @@
],
"value_code": {
"system": "SNOMED-CT",
"code": 261640009,
"display": "Stage 3C (qualifier value)"
"code": "1222806003",
"display": "American Joint Committee on Cancer stage IIIC (qualifier value)"
},
"direct_transition": "Stage III"
},
Expand All @@ -743,8 +743,8 @@
],
"value_code": {
"system": "SNOMED-CT",
"code": 261615002,
"display": "Stage 2B (qualifier value)"
"code": "1222769001",
"display": "American Joint Committee on Cancer stage IIB (qualifier value)"
},
"direct_transition": "Stage II"
},
Expand All @@ -761,8 +761,8 @@
],
"value_code": {
"system": "SNOMED-CT",
"code": 261614003,
"display": "Stage 2A (qualifier value)"
"code": "1222766008",
"display": "American Joint Committee on Cancer stage IIA (qualifier value)"
},
"direct_transition": "Stage II"
},
Expand All @@ -779,8 +779,8 @@
],
"value_code": {
"system": "SNOMED-CT",
"code": 261634002,
"display": "Stage 1A (qualifier value)"
"code": "1222724007",
"display": "American Joint Committee on Cancer stage IA (qualifier value)"
},
"direct_transition": "Stage I"
},
Expand All @@ -797,8 +797,8 @@
],
"value_code": {
"system": "SNOMED-CT",
"code": 261635001,
"display": "Stage 1B (qualifier value)"
"code": "1222728005",
"display": "American Joint Committee on Cancer stage IB (qualifier value)"
},
"direct_transition": "Stage I"
},
Expand Down Expand Up @@ -943,8 +943,8 @@
"operator": "!=",
"value_code": {
"system": "SNOMED-CT",
"code": 261635001,
"display": "Stage 1B (qualifier value)"
"code": "1222728005",
"display": "American Joint Committee on Cancer stage IB (qualifier value)"
}
}
},
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4 changes: 2 additions & 2 deletions src/main/resources/modules/breast_cancer/surgery_therapy_breast.json
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Expand Up @@ -16,8 +16,8 @@
"codes": [
{
"system": "SNOMED-CT",
"code": 69031006,
"display": "Excision of breast tissue (procedure)"
"code": "392023007",
"display": "Excision of lesion of breast (procedure)"
}
],
"duration": {
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44 changes: 22 additions & 22 deletions src/main/resources/modules/breast_cancer/tnm_diagnosis.json
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Expand Up @@ -192,8 +192,8 @@
],
"value_code": {
"system": "SNOMED-CT",
"code": 55440008,
"display": "M1 category (finding)"
"code": "1229903009",
"display": "American Joint Committee on Cancer cM1 (qualifier value)"
},
"direct_transition": "Distant Breast Cancer"
},
Expand All @@ -210,8 +210,8 @@
],
"value_code": {
"system": "SNOMED-CT",
"code": 30893008,
"display": "M0 category (finding)"
"code": "1229901006",
"display": "American Joint Committee on Cancer cM0 (qualifier value)"
},
"distributed_transition": [
{
Expand Down Expand Up @@ -242,8 +242,8 @@
"direct_transition": "N Marker",
"value_code": {
"system": "SNOMED-CT",
"code": 58790005,
"display": "T0 category (finding)"
"code": "1228882005",
"display": "American Joint Committee on Cancer cT0 (qualifier value)"
}
},
"T1_Diagnosed": {
Expand All @@ -259,8 +259,8 @@
],
"value_code": {
"system": "SNOMED-CT",
"code": 23351008,
"display": "T1 category (finding)"
"code": "1228889001",
"display": "American Joint Committee on Cancer cT1 (qualifier value)"
},
"direct_transition": "N Marker"
},
Expand All @@ -277,8 +277,8 @@
],
"value_code": {
"system": "SNOMED-CT",
"code": 67673008,
"display": "T2 category (finding)"
"code": "1228929004",
"display": "American Joint Committee on Cancer cT2 (qualifier value)"
},
"direct_transition": "N Marker"
},
Expand All @@ -295,8 +295,8 @@
],
"value_code": {
"system": "SNOMED-CT",
"code": 14410001,
"display": "T3 category (finding)"
"code": "1228938002",
"display": "American Joint Committee on Cancer cT3 (qualifier value)"
},
"direct_transition": "N Marker",
"remarks": [
Expand All @@ -316,8 +316,8 @@
],
"value_code": {
"system": "SNOMED-CT",
"code": 65565005,
"display": "T4 category (finding)"
"code": "1228944003",
"display": "American Joint Committee on Cancer cT4 (qualifier value)"
},
"direct_transition": "N Marker"
},
Expand All @@ -335,8 +335,8 @@
"direct_transition": "Terminal",
"value_code": {
"system": "SNOMED-CT",
"code": 53623008,
"display": "N1 category (finding)"
"code": "1229973008",
"display": "American Joint Committee on Cancer cN1 (qualifier value)"
}
},
"N0_Diagnosed": {
Expand All @@ -352,8 +352,8 @@
],
"value_code": {
"system": "SNOMED-CT",
"code": 62455006,
"display": "N0 category (finding)"
"code": "1229967007",
"display": "American Joint Committee on Cancer cN0 (qualifier value)"
},
"direct_transition": "Terminal"
},
Expand All @@ -370,8 +370,8 @@
],
"value_code": {
"system": "SNOMED-CT",
"code": 46059003,
"display": "N2 category (finding)"
"code": "1229978004",
"display": "American Joint Committee on Cancer cN2 (qualifier value)"
},
"direct_transition": "Terminal"
},
Expand All @@ -388,8 +388,8 @@
],
"value_code": {
"system": "SNOMED-CT",
"code": 5856006,
"display": "N3 category (finding)"
"code": "1229984001",
"display": "American Joint Committee on Cancer cN3 (qualifier value)"
},
"direct_transition": "Terminal"
},
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4 changes: 2 additions & 2 deletions src/main/resources/modules/cerebral_palsy.json
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Expand Up @@ -13,8 +13,8 @@
"codes": [
{
"system": "SNOMED-CT",
"code": 234817001,
"display": "Insertion of oral appliance for the handicapped (procedure)"
"code": "1259900009",
"display": "Fitting of intraoral appliance (procedure)"
}
],
"duration": {
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4 changes: 2 additions & 2 deletions src/main/resources/modules/colorectal_cancer.json
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Expand Up @@ -1337,8 +1337,8 @@
"codes": [
{
"system": "SNOMED-CT",
"code": "387607004",
"display": "Construction of diverting colostomy"
"code": "9905009",
"display": "Loop colostomy (procedure)"
}
],
"direct_transition": "Pain_Vital_2",
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4 changes: 2 additions & 2 deletions src/main/resources/modules/congestive_heart_failure.json
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Expand Up @@ -904,8 +904,8 @@
],
"value_code": {
"system": "SNOMED-CT",
"code": 19283009,
"display": "Rales (finding)"
"code": "48409008",
"display": "Respiratory crackles (finding)"
},
"direct_transition": "Initial Lab Work"
},
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12 changes: 6 additions & 6 deletions src/main/resources/modules/dementia.json
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Expand Up @@ -428,8 +428,8 @@
"codes": [
{
"system": "SNOMED-CT",
"code": "316744009",
"display": "Office Visit"
"code": "281036007",
"display": "Follow-up consultation (procedure)"
}
],
"direct_transition": "ModeratelySevere_MMSE_Score"
Expand Down Expand Up @@ -574,8 +574,8 @@
"codes": [
{
"system": "SNOMED-CT",
"code": "316744009",
"display": "Office Visit"
"code": "281036007",
"display": "Follow-up consultation (procedure)"
}
],
"direct_transition": "Severe_MMSE_Score"
Expand Down Expand Up @@ -625,8 +625,8 @@
"codes": [
{
"system": "SNOMED-CT",
"code": "316744009",
"display": "Office Visit"
"code": "281036007",
"display": "Follow-up consultation (procedure)"
}
],
"direct_transition": "VerySevere_MMSE_Score"
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12 changes: 6 additions & 6 deletions src/main/resources/modules/dental_and_oral_examination.json
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Expand Up @@ -378,8 +378,8 @@
"codes": [
{
"system": "SNOMED-CT",
"code": 456191000124101,
"display": "Postoperative care for dental procedure (regime/therapy)"
"code": "133899007",
"display": "Postoperative care (regime/therapy)"
}
],
"distribution": {
Expand Down Expand Up @@ -681,8 +681,8 @@
"codes": [
{
"system": "SNOMED-CT",
"code": 456191000124101,
"display": "Postoperative care for dental procedure (regime/therapy)"
"code": "133899007",
"display": "Postoperative care (regime/therapy)"
}
],
"distribution": {
Expand Down Expand Up @@ -988,8 +988,8 @@
"codes": [
{
"system": "SNOMED-CT",
"code": 456191000124101,
"display": "Postoperative care for dental procedure (regime/therapy)"
"code": "133899007",
"display": "Postoperative care (regime/therapy)"
}
],
"distribution": {
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4 changes: 2 additions & 2 deletions src/main/resources/modules/dentures.json
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Expand Up @@ -531,8 +531,8 @@
"codes": [
{
"system": "SNOMED-CT",
"code": 456191000124101,
"display": "Postoperative care for dental procedure (regime/therapy)"
"code": "133899007",
"display": "Postoperative care (regime/therapy)"
}
],
"distribution": {
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4 changes: 2 additions & 2 deletions src/main/resources/modules/heart/tavr/alt_access.json
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Expand Up @@ -91,8 +91,8 @@
"direct_transition": "Terminal",
"value_code": {
"system": "SNOMED-CT",
"code": 261051005,
"display": "Aortic (qualifier value)"
"code": "261146002",
"display": "Para-aortic (qualifier value)"
}
},
"Subclavian": {
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4 changes: 2 additions & 2 deletions src/main/resources/modules/hiv/hiv_baseline.json
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Expand Up @@ -1950,8 +1950,8 @@
"codes": [
{
"system": "SNOMED-CT",
"code": 409066002,
"display": "Education, guidance and counseling (procedure)"
"code": "410314003",
"display": "Health promotion education, guidance, and counseling (procedure)"
}
],
"distribution": {
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4 changes: 2 additions & 2 deletions src/main/resources/modules/injuries.json
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Expand Up @@ -2916,8 +2916,8 @@
"type": "Device",
"code": {
"system": "SNOMED-CT",
"code": 705406009,
"display": "Walker (physical object)"
"code": "1255320005",
"display": "Wheeled walker (physical object)"
},
"direct_transition": "Broken_Bone_Surgery",
"assign_to_attribute": "injury_dme"
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4 changes: 2 additions & 2 deletions src/main/resources/modules/injuries/broken_jaw.json
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Expand Up @@ -177,8 +177,8 @@
"type": "ImagingStudy",
"procedure_code": {
"system": "SNOMED-CT",
"code": 19589009,
"display": "Radiography of mandible (procedure)"
"code": "1290789000",
"display": "Plain X-ray of mandible (procedure)"
},
"series": [
{
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