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Trevor Bedford edited this page Jan 29, 2014 · 1 revision

Things to add:

  • loss / waning of immunity
  • coinfection
  • allow non-sterilizing homologous immunity
  • recombination (is more difficult):
    • when coinfection occurs, mutant one of the parent viruses
    • need PDF of mutation distance
  • calculate pairwise antigenic diversity
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