Merge pull request #843 from uclahs-cds/czhu-fix-call-variant

fix (callVariant): no reference node issue
uclahs-cds · Feb 7, 2024 · 0ba2f84 · 0ba2f84
2 parents 2dc0ae6 + 8007e53
commit 0ba2f84
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diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -24,6 +24,8 @@ This project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.htm
 
 - Fixed `parseVEP` to handle insertions in start-inclusion. #840
 
+- Fixed `callVariant` of 'no reference out node found'. #842
+
 ## [1.2.1] - 2023-10-05
 
 ### Add

diff --git a/moPepGen/svgraph/ThreeFrameTVG.py b/moPepGen/svgraph/ThreeFrameTVG.py
@@ -201,7 +201,7 @@ def is_out_bond_to_any_root(self, node:TVGNode):
     @staticmethod
     def is_reference_edge(in_node:TVGNode, out_node:TVGNode):
         """ checks if this is a reference edge """
-        if out_node.is_reference() and out_node.subgraph_id == in_node.subgraph_id:
+        if out_node.is_reference() and out_node.subgraph_id == in_node.get_last_subgraph_id():
             return True
         in_vars = {x.variant for x in in_node.variants}
         out_vars = {x.variant for x in out_node.variants}
-Original file line number
+Diff line change
@@ Expand Up @@
     - Fixed `parseVEP` to handle insertions in start-inclusion. #840
+    - Fixed `callVariant` of 'no reference out node found'. #842
     ## [1.2.1] - 2023-10-05
     ### Add
@@ Expand Down @@