style: fix

uclahs-cds · Mar 4, 2025 · 69e9b25 · 69e9b25
1 parent 1df4e32
commit 69e9b25
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Showing 2 changed files with 2 additions and 3 deletions.
diff --git a/moPepGen/cli/parse_vep.py b/moPepGen/cli/parse_vep.py
@@ -8,7 +8,6 @@
 from typing import TYPE_CHECKING
 import argparse
 import gzip
-from typing import Dict, List
 from pathlib import Path
 from moPepGen.parser import VEPParser
 from moPepGen.err import TranscriptionStopSiteMutationError, TranscriptionStartSiteMutationError
@@ -20,6 +19,7 @@
 OUTPUT_FILE_FORMATS = ['.gvf']
 
 if TYPE_CHECKING:
+    from typing import Dict, List
     from logging import Logger
 
 # pylint: disable=W0212
@@ -121,7 +121,7 @@ def parse_vep(args:argparse.Namespace) -> None:
                 except:
                     if args.skip_failed:
                         logger.warning(
-                            f"VEP record failed to convert: {record}"
+                            "VEP record failed to convert: %s", str(record)
                         )
                         tally.failed.total += 1
                         continue

diff --git a/moPepGen/svgraph/ThreeFrameTVG.py b/moPepGen/svgraph/ThreeFrameTVG.py
@@ -1902,7 +1902,6 @@ def fit_into_codons(self) -> None:
                 queue.appendleft(cur)
                 continue
 
-            cur_copy = str(cur.seq.seq)
             try:
                 self.align_variants(cur)
             except err.FailedToFindVariantBubbleError: