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environment.yml
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name: hocort-eval
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=1_gnu
- aioeasywebdav=2.4.0=py38h578d9bd_1001
- aiohttp=3.8.1=py38h497a2fe_0
- aiosignal=1.2.0=pyhd8ed1ab_0
- amply=0.1.4=py_0
- appdirs=1.4.4=pyh9f0ad1d_0
- async-timeout=4.0.2=pyhd8ed1ab_0
- atk-1.0=2.36.0=h3371d22_4
- attmap=0.13.2=pyhd8ed1ab_0
- attrs=21.4.0=pyhd8ed1ab_0
- backports=1.0=py_2
- backports.functools_lru_cache=1.6.4=pyhd8ed1ab_0
- bbmap=38.95=he522d1c_0
- bcrypt=3.2.0=py38h497a2fe_2
- bedtools=2.30.0=h7d7f7ad_2
- biopython=1.78=py38h7f8727e_0
- blast=2.5.0=hc0b0e79_3
- boost=1.77.0=py38h2b96118_0
- boost-cpp=1.77.0=h359cf19_1
- boto3=1.20.52=pyhd8ed1ab_0
- botocore=1.23.53=pyhd8ed1ab_0
- bowtie2=2.4.5=py38he5f0661_1
- brotli=1.0.9=h7f98852_6
- brotli-bin=1.0.9=h7f98852_6
- brotlipy=0.7.0=py38h497a2fe_1003
- bwa-mem2=2.2.1=h9a82719_1
- bzip2=1.0.8=h7f98852_4
- c-ares=1.18.1=h7f98852_0
- ca-certificates=2021.10.8=ha878542_0
- cachetools=5.0.0=pyhd8ed1ab_0
- cairo=1.16.0=ha00ac49_1009
- certifi=2021.10.8=py38h578d9bd_1
- cffi=1.15.0=py38h3931269_0
- charset-normalizer=2.0.11=pyhd8ed1ab_0
- coincbc=2.10.5=hcee13e7_1
- colorama=0.4.4=pyh9f0ad1d_0
- configargparse=1.5.3=pyhd8ed1ab_0
- connection_pool=0.0.3=pyhd3deb0d_0
- cryptography=36.0.1=py38h3e25421_0
- curl=7.81.0=h2574ce0_0
- cutadapt=3.5=py38h4a8c8d9_0
- cycler=0.11.0=pyhd8ed1ab_0
- datrie=0.8.2=py38h497a2fe_3
- defusedxml=0.7.1=pyhd8ed1ab_0
- dnaio=0.7.1=py38h4a8c8d9_0
- docutils=0.18.1=py38h578d9bd_0
- dropbox=11.27.0=pyhd8ed1ab_0
- expat=2.4.4=h9c3ff4c_0
- fftw=3.3.10=nompi_h77c792f_102
- filechunkio=1.8=py_2
- filelock=3.4.2=pyhd8ed1ab_1
- font-ttf-dejavu-sans-mono=2.37=hab24e00_0
- font-ttf-inconsolata=3.000=h77eed37_0
- font-ttf-source-code-pro=2.038=h77eed37_0
- font-ttf-ubuntu=0.83=hab24e00_0
- fontconfig=2.13.96=ha180cfb_0
- fonts-conda-ecosystem=1=0
- fonts-conda-forge=1=0
- fonttools=4.29.1=py38h497a2fe_0
- freetype=2.10.4=h0708190_1
- fribidi=1.0.10=h36c2ea0_0
- frozenlist=1.3.0=py38h497a2fe_0
- ftputil=5.0.3=pyhd8ed1ab_0
- future=0.18.2=py38h578d9bd_4
- gdk-pixbuf=2.42.6=h04a7f16_0
- genometools-genometools=1.6.2=py38h63728ea_2
- gettext=0.19.8.1=h73d1719_1008
- ghostscript=9.18=1
- giflib=5.2.1=h36c2ea0_2
- gitdb=4.0.9=pyhd8ed1ab_0
- gitpython=3.1.26=pyhd8ed1ab_0
- google-api-core=2.4.0=pyhd8ed1ab_0
- google-api-python-client=2.37.0=pyhd8ed1ab_0
- google-auth=2.6.0=pyh6c4a22f_1
- google-auth-httplib2=0.1.0=pyhd8ed1ab_0
- google-cloud-core=2.2.2=pyh6c4a22f_0
- google-cloud-storage=2.0.0=pyh6c4a22f_0
- google-crc32c=1.1.2=py38h8838a9a_2
- google-resumable-media=2.1.0=pyh6c4a22f_0
- googleapis-common-protos=1.54.0=py38h578d9bd_0
- graphite2=1.3.13=h58526e2_1001
- graphviz=2.50.0=h85b4f2f_1
- grpcio=1.43.0=py38hdd6454d_0
- gtk2=2.24.33=h539f30e_1
- gts=0.7.6=h64030ff_2
- harfbuzz=3.3.1=hb4a5f5f_0
- hdf5=1.10.6=nompi_h6a2412b_1114
- hisat2=2.2.1=h1b792b2_3
- htseq=1.99.2=py38h803c66d_1
- htslib=1.14=h9093b5e_0
- httplib2=0.20.2=pyhd8ed1ab_1
- icu=69.1=h9c3ff4c_0
- idna=3.3=pyhd8ed1ab_0
- imagemagick=7.1.0_23=pl5321hb118871_0
- importlib-metadata=4.10.1=py38h578d9bd_0
- importlib_resources=5.4.0=pyhd8ed1ab_0
- iniconfig=1.1.1=pyh9f0ad1d_0
- insilicoseq=1.5.4=pyh5e36f6f_0
- ipython_genutils=0.2.0=py_1
- isa-l=2.30.0=ha770c72_4
- jbig=2.1=h7f98852_2003
- jinja2=3.0.3=pyhd8ed1ab_0
- jmespath=0.10.0=pyh9f0ad1d_0
- joblib=1.1.0=pyhd8ed1ab_0
- jpeg=9e=h7f98852_0
- jsonschema=4.4.0=pyhd8ed1ab_0
- jupyter_core=4.9.1=py38h578d9bd_1
- k8=0.2.5=h9a82719_1
- kiwisolver=1.3.2=py38h1fd1430_1
- kraken2=2.1.2=pl5321h7d875b9_1
- krb5=1.19.2=hcc1bbae_3
- last=1260=h2e03b76_0
- lcms2=2.12=hddcbb42_0
- ld_impl_linux-64=2.36.1=hea4e1c9_2
- lerc=2.2.1=h9c3ff4c_0
- libblas=3.9.0=13_linux64_openblas
- libbrotlicommon=1.0.9=h7f98852_6
- libbrotlidec=1.0.9=h7f98852_6
- libbrotlienc=1.0.9=h7f98852_6
- libcblas=3.9.0=13_linux64_openblas
- libcrc32c=1.1.2=h9c3ff4c_0
- libcurl=7.81.0=h2574ce0_0
- libdeflate=1.7=h7f98852_5
- libedit=3.1.20191231=he28a2e2_2
- libev=4.33=h516909a_1
- libffi=3.4.2=h7f98852_5
- libgcc=7.2.0=h69d50b8_2
- libgcc-ng=11.2.0=h1d223b6_12
- libgd=2.3.3=h3cfcdeb_1
- libgfortran-ng=11.2.0=h69a702a_12
- libgfortran5=11.2.0=h5c6108e_12
- libglib=2.70.2=h174f98d_2
- libgomp=11.2.0=h1d223b6_12
- libiconv=1.16=h516909a_0
- libidn2=2.3.2=h7f98852_0
- libimagequant=2.17.0=h7f98852_1
- liblapack=3.9.0=13_linux64_openblas
- libnghttp2=1.46.0=h812cca2_0
- libnsl=2.0.0=h7f98852_0
- libopenblas=0.3.18=pthreads_h8fe5266_0
- libpng=1.6.37=h21135ba_2
- libprotobuf=3.19.4=h780b84a_0
- librsvg=2.52.5=hc3c00ef_1
- libsodium=1.0.18=h36c2ea0_1
- libssh2=1.10.0=ha56f1ee_2
- libstdcxx-ng=11.2.0=he4da1e4_12
- libtiff=4.3.0=hf544144_1
- libtool=2.4.6=h9c3ff4c_1008
- libunistring=0.9.10=h7f98852_0
- libuuid=2.32.1=h7f98852_1000
- libwebp=1.2.2=h3452ae3_0
- libwebp-base=1.2.2=h7f98852_1
- libxcb=1.13=h7f98852_1004
- libxml2=2.9.12=h885dcf4_1
- libzlib=1.2.11=h36c2ea0_1013
- logmuse=0.2.6=pyh8c360ce_0
- lz4-c=1.9.3=h9c3ff4c_1
- markupsafe=2.0.1=py38h497a2fe_1
- matplotlib-base=3.5.1=py38hf4fb855_0
- minimap2=2.24=h5bf99c6_0
- multidict=6.0.2=py38h497a2fe_0
- munkres=1.0.7=py_1
- nanosim=3.0.2=hdfd78af_0
- nbformat=5.1.3=pyhd8ed1ab_0
- ncbi-genome-download=0.3.1=pyh5e36f6f_0
- ncbi-ngs-sdk=2.11.2=hff44eed_0
- ncurses=6.2=h58526e2_4
- networkx=2.6.3=pyhd8ed1ab_1
- numpy=1.22.2=py38h6ae9a64_0
- oauth2client=4.1.3=py_0
- openjdk=8.0.312=h7f98852_0
- openjpeg=2.4.0=hb52868f_1
- openssl=1.1.1l=h7f98852_0
- ossuuid=1.6.2=hf484d3e_1000
- packaging=21.3=pyhd8ed1ab_0
- pandas=1.4.0=py38h43a58ef_0
- pango=1.48.10=h54213e6_2
- parallel=20160622=1
- paramiko=2.9.2=pyhd8ed1ab_0
- pbzip2=1.1.13=0
- pcre=8.45=h9c3ff4c_0
- peppy=0.31.2=pyhd8ed1ab_2
- perl=5.32.1=1_h7f98852_perl5
- perl-business-isbn=3.004=pl5321hdfd78af_1
- perl-business-isbn-data=20140910.003=pl5321hdfd78af_1
- perl-carp=1.38=pl5321hdfd78af_4
- perl-constant=1.33=pl5321hdfd78af_2
- perl-data-dumper=2.183=pl5321h779adbc_0
- perl-encode=3.16=pl5321h779adbc_0
- perl-exporter=5.72=pl5321hdfd78af_2
- perl-extutils-makemaker=7.64=pl5321hd8ed1ab_0
- perl-file-path=2.18=pl5321hd8ed1ab_0
- perl-file-temp=0.2304=pl5321hd8ed1ab_0
- perl-mime-base64=3.16=pl5321h779adbc_1
- perl-parent=0.236=pl5321hdfd78af_2
- perl-threaded=5.32.1=hdfd78af_1
- perl-uri=1.76=pl5321hdfd78af_1
- perl-xml-libxml=2.0132=pl5321h8cb1974_2
- perl-xml-namespacesupport=1.12=pl5321hdfd78af_1
- perl-xml-sax=1.02=pl5321hdfd78af_1
- perl-xml-sax-base=1.09=pl5321hdfd78af_1
- pigz=2.6=h27826a3_0
- pillow=9.0.1=py38he2f12e7_1
- pip=22.0.3=pyhd8ed1ab_0
- pixman=0.40.0=h36c2ea0_0
- pkg-config=0.29.2=h36c2ea0_1008
- pluggy=1.0.0=py38h578d9bd_2
- ply=3.11=py_1
- popt=1.16=1
- prettytable=3.0.0=pyhd8ed1ab_0
- protobuf=3.19.4=py38h709712a_0
- psutil=5.9.0=py38h497a2fe_0
- pthread-stubs=0.4=h36c2ea0_1001
- pulp=2.6.0=py38h578d9bd_0
- py=1.11.0=pyh6c4a22f_0
- pyasn1=0.4.8=py_0
- pyasn1-modules=0.2.7=py_0
- pybedtools=0.8.2=py38h69e0bdc_1
- pycparser=2.21=pyhd8ed1ab_0
- pygments=2.11.2=pyhd8ed1ab_0
- pygraphviz=1.8=py38h86b1bdd_0
- pynacl=1.5.0=py38h497a2fe_0
- pyopenssl=22.0.0=pyhd8ed1ab_0
- pyparsing=3.0.7=pyhd8ed1ab_0
- pyrsistent=0.18.1=py38h497a2fe_0
- pysam=0.16.0.1=py38hf7546f9_3
- pysftp=0.2.9=py_1
- pysocks=1.7.1=py38h578d9bd_4
- pytest=7.0.0=py38h578d9bd_0
- python=3.8.12=hb7a2778_2_cpython
- python-dateutil=2.8.2=pyhd8ed1ab_0
- python-irodsclient=1.1.1=pyhd8ed1ab_0
- python-isal=0.11.1=py38h497a2fe_1
- python_abi=3.8=2_cp38
- pytz=2021.3=pyhd8ed1ab_0
- pyu2f=0.1.5=pyhd8ed1ab_0
- pyyaml=6.0=py38h497a2fe_3
- ratelimiter=1.2.0=py_1002
- readline=8.1=h46c0cb4_0
- requests=2.27.1=pyhd8ed1ab_0
- rsa=4.8=pyhd8ed1ab_0
- rsync=3.2.3=hffa082f_3
- s3transfer=0.5.1=pyhd8ed1ab_0
- samtools=1.14=hb421002_0
- scikit-learn=1.0.2=py38h1561384_0
- scipy=1.8.0=py38h56a6a73_1
- setuptools=60.8.1=py38h578d9bd_0
- six=1.16.0=pyh6c4a22f_0
- slacker=0.14.0=py_0
- smart_open=5.2.1=pyhd8ed1ab_0
- smmap=3.0.5=pyh44b312d_0
- snakemake=6.15.5=hdfd78af_0
- snakemake-minimal=6.15.5=pyhdfd78af_0
- sqlite=3.37.0=h9cd32fc_0
- sra-tools=2.11.0=pl5321h314213e_2
- stone=3.3.1=pyhd8ed1ab_0
- stopit=1.1.2=py_0
- tabulate=0.8.9=pyhd8ed1ab_0
- tar=1.34=ha1f6473_0
- tbb=2020.2=h4bd325d_4
- threadpoolctl=3.1.0=pyh8a188c0_0
- tk=8.6.11=h27826a3_1
- tomli=2.0.1=pyhd8ed1ab_0
- toposort=1.7=pyhd8ed1ab_0
- tqdm=4.62.3=pyhd8ed1ab_0
- traitlets=5.1.1=pyhd8ed1ab_0
- typing-extensions=4.0.1=hd8ed1ab_0
- typing_extensions=4.0.1=pyha770c72_0
- ubiquerg=0.6.1=pyh9f0ad1d_0
- unicodedata2=14.0.0=py38h497a2fe_0
- uritemplate=4.1.1=pyhd8ed1ab_0
- urllib3=1.26.8=pyhd8ed1ab_1
- veracitools=0.1.3=py_0
- wcwidth=0.2.5=pyh9f0ad1d_2
- wget=1.20.3=ha56f1ee_1
- wheel=0.37.1=pyhd8ed1ab_0
- wrapt=1.13.3=py38h497a2fe_1
- xopen=1.4.0=py38h578d9bd_0
- xorg-kbproto=1.0.7=h7f98852_1002
- xorg-libice=1.0.10=h7f98852_0
- xorg-libsm=1.2.3=hd9c2040_1000
- xorg-libx11=1.7.2=h7f98852_0
- xorg-libxau=1.0.9=h7f98852_0
- xorg-libxdmcp=1.1.3=h7f98852_0
- xorg-libxext=1.3.4=h7f98852_1
- xorg-libxrender=0.9.10=h7f98852_1003
- xorg-libxt=1.2.1=h7f98852_2
- xorg-renderproto=0.11.1=h7f98852_1002
- xorg-xextproto=7.3.0=h7f98852_1002
- xorg-xproto=7.0.31=h7f98852_1007
- xxhash=0.8.0=h7f98852_3
- xz=5.2.5=h516909a_1
- yaml=0.2.5=h7f98852_2
- yarl=1.7.2=py38h497a2fe_1
- zipp=3.7.0=pyhd8ed1ab_1
- zlib=1.2.11=h36c2ea0_1013
- zstd=1.5.2=ha95c52a_0
- pip:
- argparse==1.4.0
- mlxtend==0.19.0
- sklearn==0.0