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raylruiraylrui
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add srllc and srssc events
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‎config/stacks/schema/events.ts

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@@ -22,6 +22,24 @@ export const getEventSchemaStackProps = (): SchemaStackProps => {
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docBase + '/sequencerunmanager/SequenceRunStateChange.schema.json'
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),
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},
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{
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...defaultProps,
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schemaName: 'orcabus.sequencerunmanager@SequenceRunSampleSheetChange',
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schemaDescription: 'Sample sheet change event for sequencing run by SequenceRunManager',
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schemaLocation: path.join(
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__dirname,
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docBase + '/sequencerunmanager/SequenceRunSampleSheetChange.schema.json'
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),
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},
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{
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...defaultProps,
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schemaName: 'orcabus.sequencerunmanager@SequenceRunLibraryLinkingChange',
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schemaDescription: 'Library linking change event for sequencing run by SequenceRunManager',
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schemaLocation: path.join(
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__dirname,
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docBase + '/sequencerunmanager/SequenceRunLibraryLinkingChange.schema.json'
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),
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},
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{
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...defaultProps,
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schemaName: 'orcabus.workflowmanager@WorkflowRunStateChange',

‎docs/schemas/events/sequencerunmanager/Makefile

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test:
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@check-jsonschema --schemafile SequenceRunStateChange.schema.json example/SRSC__started.json
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@check-jsonschema --schemafile SequenceRunStateChange.schema.json example/SRSC__succeeded.json
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@check-jsonschema --schemafile SequenceRunSampleSheetChange.schema.json example/SRSSC.json
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@check-jsonschema --schemafile SequenceRunLibraryLinkingChange.schema.json example/SRLLC.json

‎docs/schemas/events/sequencerunmanager/SequenceRunLibraryLinkingChange.schema.json

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{
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"$schema": "http://json-schema.org/draft-04/schema#",
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"$id": "https://raw.githubusercontent.com/umccr/orcabus/main/docs/schemas/events/sequencerunmanager/SequenceRunLibraryLinkingChange.schema.json",
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"description": "EventBridge custom event schema for orcabus.sequencerunmanager@SequenceRunLibraryLinkingChange",
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"title": "AWSEvent",
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"type": "object",
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"required": [
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"detail-type",
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"detail",
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"source"
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],
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"properties": {
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"id": {
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"type": "string"
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},
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"region": {
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"type": "string"
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},
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"resources": {
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"type": "array",
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"items": {
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"type": "string"
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}
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},
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"source": {
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"type": "string"
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},
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"time": {
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"type": "string",
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"format": "date-time"
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},
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"version": {
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"type": "string"
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},
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"account": {
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"type": "string"
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},
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"detail-type": {
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"type": "string"
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},
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"detail": {
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"$ref": "#/definitions/SequenceRunLibraryLinkingChange"
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}
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},
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"definitions": {
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"SequenceRunLibraryLinkingChange": {
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"type": "object",
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"required": [
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"instrumentRunId",
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"sequenceRunId",
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"sequenceRunOrcabusId",
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"timeStamp",
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"linkedLibraries"
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],
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"properties": {
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"instrumentRunId": {
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"type": "string"
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},
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"sequenceRunId": {
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"type": "string"
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},
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"sequenceRunOrcabusId": {
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"type": "string"
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},
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"timeStamp": {
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"type": "string"
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},
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"linkedLibraries": {
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"type": "array",
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"items": {
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"type": "string"
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}
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}
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}
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}
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}
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}

‎docs/schemas/events/sequencerunmanager/SequenceRunSampleSheetChange.schema.json

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{
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"$schema": "http://json-schema.org/draft-04/schema#",
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"$id": "https://raw.githubusercontent.com/umccr/orcabus/main/docs/schemas/events/sequencerunmanager/SequenceRunSampleSheetChange.schema.json",
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"description": "EventBridge custom event schema for orcabus.sequencerunmanager@SequenceRunSampleSheetChange",
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"title": "AWSEvent",
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"type": "object",
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"required": [
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"detail-type",
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"detail",
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"source"
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],
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"properties": {
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"id": {
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"type": "string"
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},
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"region": {
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"type": "string"
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},
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"resources": {
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"type": "array",
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"items": {
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"type": "string"
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}
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},
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"source": {
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"type": "string"
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},
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"time": {
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"type": "string",
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"format": "date-time"
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},
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"version": {
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"type": "string"
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},
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"account": {
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"type": "string"
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},
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"detail-type": {
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"type": "string"
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},
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"detail": {
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"$ref": "#/definitions/SequenceRunSampleSheetChange"
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}
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},
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"definitions": {
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"SequenceRunSampleSheetChange": {
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"type": "object",
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"required": [
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"instrumentRunId",
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"sequenceRunId",
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"sequenceRunOrcabusId",
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"timeStamp",
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"sampleSheetName",
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"samplesheetbase64gz"
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],
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"properties": {
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"instrumentRunId": {
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"type": "string"
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},
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"sequenceRunId": {
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"type": "string"
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},
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"sequenceRunOrcabusId": {
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"type": "string"
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},
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"timeStamp": {
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"type": "string"
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},
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"sampleSheetName": {
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"type": "string"
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},
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"samplesheetbase64gz": {
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"type": "string"
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}
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}
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}
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}
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}

‎docs/schemas/events/sequencerunmanager/example/SRLLC.json

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{
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"version": "0",
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"id": "12345678-90ab-cdef-1234-567890abcdef",
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"detail-type": "SequenceRunLibraryLinkingChange",
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"source": "orcabus.sequencerunmanager",
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"account": "000000000000",
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"time": "2025-03-00T00:00:00Z",
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"region": "ap-southeast-2",
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"resources": [],
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"detail": {
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"instrumentRunId": "123456_A7890_1234_ABCDEFGH",
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"sequenceRunId": "r.1234567890abcdefghijklmn",
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"sequenceRunOrcabusId": "seq.1234567890ABCDEFGHIJKLMN",
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"timeStamp": "2025-03-01T00:00:00.123456Z",
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"linkedLibraries": [
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"L2000000",
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"L2000001",
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"L2000002"
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]
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}
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}

‎docs/schemas/events/sequencerunmanager/example/SRSSC.json

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{
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"version": "0",
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"id": "12345678-90ab-cdef-1234-567890abcdef",
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"detail-type": "SequenceRunSampleSheetChange",
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"source": "orcabus.sequencerunmanager",
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"account": "000000000000",
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"time": "2025-03-00T00:00:00Z",
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"region": "ap-southeast-2",
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"resources": [],
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"detail": {
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"instrumentRunId": "123456_A7890_1234_ABCDEFGH",
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"sequenceRunId": "r.1234567890abcdefghijklmn",
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"sequenceRunOrcabusId": "seq.1234567890ABCDEFGHIJKLMN",
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"timeStamp": "2025-03-01T00:00:00.123456Z",
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"sampleSheetName": "sampleSheet_v2.csv",
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"samplesheetbase64gz": "base64_encoded_samplesheet........"
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}
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}

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