From 76e9a2c8a6517cb1e36a8b94a96e86fa64b8cbef Mon Sep 17 00:00:00 2001 From: Luca Cinquini Date: Thu, 22 Feb 2024 07:18:28 -0700 Subject: [PATCH] No outdir --- airflow/docker/cwl/docker_cwl_entrypoint.sh | 7 ++++--- 1 file changed, 4 insertions(+), 3 deletions(-) diff --git a/airflow/docker/cwl/docker_cwl_entrypoint.sh b/airflow/docker/cwl/docker_cwl_entrypoint.sh index 541cf8f..b17488d 100755 --- a/airflow/docker/cwl/docker_cwl_entrypoint.sh +++ b/airflow/docker/cwl/docker_cwl_entrypoint.sh @@ -28,11 +28,12 @@ do done docker ps +ls -l /var/run/docker.sock # Execute CWL workflow -#source /usr/share/cwl/venv/bin/activate -#cwl-runner --outdir $output_dir $cwl_workflow /tmp/job_args.json -#deactivate +source /usr/share/cwl/venv/bin/activate +cwl-runner $cwl_workflow /tmp/job_args.json +deactivate # Stop Docker engine pkill -f dockerd