[FIX] cwl-runner: error: argument --tmp-outdir-prefix: not allowed wi…

…th argument --cachedir
unity-sds · Mar 7, 2024 · 696d0dc · 696d0dc
1 parent 7e10f63
commit 696d0dc
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diff --git a/airflow/dags/docker_cwl_pod.yaml b/airflow/dags/docker_cwl_pod.yaml
@@ -9,7 +9,7 @@ spec:
   containers:
   - name: cwl-docker
     # image: ghcr.io/unity-sds/unity-sps/sps-docker-cwl:2.0.0-alpha.1
-    image: ghcr.io/unity-sds/unity-sps/sps-docker-cwl:develop6
+    image: ghcr.io/unity-sds/unity-sps/sps-docker-cwl:develop7
     imagePullPolicy: Always
     command: ["/usr/share/cwl/docker_cwl_entrypoint.sh"]
     securityContext:

diff --git a/airflow/docker/cwl/docker_cwl_entrypoint.sh b/airflow/docker/cwl/docker_cwl_entrypoint.sh
@@ -44,8 +44,7 @@ done
 # Execute CWL workflow
 . /usr/share/cwl/venv/bin/activate
 pwd
-mkdir -p ./cache
-cwl-runner --cachedir ./cache --tmp-outdir-prefix "$PWD"/ "$cwl_workflow" "$job_args"
+cwl-runner --tmp-outdir-prefix "$PWD"/ "$cwl_workflow" "$job_args"
 deactivate
 
 # Stop Docker engine