-
Notifications
You must be signed in to change notification settings - Fork 131
/
Copy pathsingle-cell-ebi-gxa.yaml.lock
1287 lines (1287 loc) · 25.1 KB
/
single-cell-ebi-gxa.yaml.lock
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
639
640
641
642
643
644
645
646
647
648
649
650
651
652
653
654
655
656
657
658
659
660
661
662
663
664
665
666
667
668
669
670
671
672
673
674
675
676
677
678
679
680
681
682
683
684
685
686
687
688
689
690
691
692
693
694
695
696
697
698
699
700
701
702
703
704
705
706
707
708
709
710
711
712
713
714
715
716
717
718
719
720
721
722
723
724
725
726
727
728
729
730
731
732
733
734
735
736
737
738
739
740
741
742
743
744
745
746
747
748
749
750
751
752
753
754
755
756
757
758
759
760
761
762
763
764
765
766
767
768
769
770
771
772
773
774
775
776
777
778
779
780
781
782
783
784
785
786
787
788
789
790
791
792
793
794
795
796
797
798
799
800
801
802
803
804
805
806
807
808
809
810
811
812
813
814
815
816
817
818
819
820
821
822
823
824
825
826
827
828
829
830
831
832
833
834
835
836
837
838
839
840
841
842
843
844
845
846
847
848
849
850
851
852
853
854
855
856
857
858
859
860
861
862
863
864
865
866
867
868
869
870
871
872
873
874
875
876
877
878
879
880
881
882
883
884
885
886
887
888
889
890
891
892
893
894
895
896
897
898
899
900
901
902
903
904
905
906
907
908
909
910
911
912
913
914
915
916
917
918
919
920
921
922
923
924
925
926
927
928
929
930
931
932
933
934
935
936
937
938
939
940
941
942
943
944
945
946
947
948
949
950
951
952
953
954
955
956
957
958
959
960
961
962
963
964
965
966
967
968
969
970
971
972
973
974
975
976
977
978
979
980
981
982
983
984
985
986
987
988
989
990
991
992
993
994
995
996
997
998
999
1000
install_repository_dependencies: true
install_resolver_dependencies: true
install_tool_dependencies: false
tools:
- name: dropletutils_read_10x
owner: ebi-gxa
revisions:
- 3dd08eb96cf6
- 48c1e7b39675
- ca62f52e0d7f
- d62a9aa0411e
- f25f42dc256a
tool_panel_section_id: hca_sc_utils_viz
- name: dropletutils_empty_drops
owner: ebi-gxa
revisions:
- 00b41600e1c1
- 8dd732e13393
- da189ce4016b
- fa662ca7ae7f
tool_panel_section_id: hca_sc_utils_viz
- name: gtf2gene_list
owner: ebi-gxa
revisions:
- 00ee933b08fd
- 040d4b3a19d5
- 14b3f2a4523b
- 1a642de6db01
- b6354c917ef9
- e255c0e5dfca
tool_panel_section_id: hca_sc_utils_viz
- name: retrieve_scxa
owner: ebi-gxa
revisions:
- 72b6e1747e37
- cc21614b6693
- cd6b80f62fcc
tool_panel_section_id: hca_sc_get-scrna
- name: hca_matrix_downloader
owner: ebi-gxa
revisions:
- 2e81fbe036b2
- c127d4124583
- c3c85b67d118
tool_panel_section_id: hca_sc_get-scrna
- name: sc3_calc_biology
owner: ebi-gxa
revisions:
- 2ee3dd245f72
tool_panel_section_id: hca_sc_sc3_tools
- name: sc3_calc_consens
owner: ebi-gxa
revisions:
- aa83350751f5
tool_panel_section_id: hca_sc_sc3_tools
- name: sc3_calc_dists
owner: ebi-gxa
revisions:
- d005fe979d80
tool_panel_section_id: hca_sc_sc3_tools
- name: sc3_calc_transfs
owner: ebi-gxa
revisions:
- b06019da7b5a
tool_panel_section_id: hca_sc_sc3_tools
- name: sc3_estimate_k
owner: ebi-gxa
revisions:
- aab4d3a52ee3
tool_panel_section_id: hca_sc_sc3_tools
- name: sc3_kmeans
owner: ebi-gxa
revisions:
- b3c3cf813a49
tool_panel_section_id: hca_sc_sc3_tools
- name: sc3_prepare
owner: ebi-gxa
revisions:
- 9a2b61bfdaa9
tool_panel_section_id: hca_sc_sc3_tools
- name: anndata_ops
owner: ebi-gxa
revisions:
- 004cd2ccf7fc
- '265348777440'
- 2e8022f1923c
- 35422e51b804
- 52ee45fd7690
- 53a251c6d991
- 6aa025ea64d3
- 7ebc22f77d86
- 825dfd66e3fb
- 890fb06a2893
- 93ecc487a7d1
- 98f37271c17c
- a0274bc43b7e
- a36d7a315be7
- a4774b7b2e85
- a4ad76e3dc4a
- c09d61ede252
- d868221262d5
- e4bb4666449e
- ec4604919de3
- f0a29f4b9be9
- fe75d2414dc0
tool_panel_section_id: hca_sc_scanpy_tools
- name: scanpy_compute_graph
owner: ebi-gxa
revisions:
- 087a7edb0995
- 0fe56ddbab0d
- 1dc0ea7a7e62
- 22bd5861706d
- 232937b5bb8f
- 2401808e20e8
- 3bce5710a90b
- 3cf0177ed87e
- 3d242b0d97d0
- 53e6944bd162
- 5ec3b715809c
- 6417cccad133
- 6b2673e1f4c6
- 7779b9dcf040
- 7ad420b1be89
- a58d4166805b
- aada17e5da75
- bc9e8de21efb
- c78c930e3263
- c7a904e3e09b
- c938bef2ca98
- e6c989a9211c
- e7fd6981c0f0
- f776e3ed3c03
- fe740b19e3b9
tool_panel_section_id: hca_sc_scanpy_tools
- name: scanpy_filter_cells
owner: ebi-gxa
revisions:
- 26a98de26847
- 356fa6c27341
- 361608369dda
- 3c3c254c9deb
- 3dcc1629e420
- 4c42e5d8cb7c
- 55ccc0a121bc
- 598f6161a665
- 7fd39eb52f38
- 8d97bee137b5
- 8e48fa9618c1
- 9024cf7a9a13
- 9f0ca1641ab2
- b28ba58033ea
- ba64b91ed2b9
- bf1e0bdec1db
- c23d0ff783d4
- da8c130348b6
- dcfb23758646
- df56c78c5a8e
- e05cafd4e2b2
- e9283529cba1
tool_panel_section_id: hca_sc_scanpy_tools
- name: scanpy_filter_genes
owner: ebi-gxa
revisions:
- 082832adea96
- 083418c42b90
- 0bba942e0869
- 228a51c5bc35
- 23d838d1569d
- 303c559f4e1f
- 474a69c47184
- 4bc377096eea
- 6953c7e519cd
- 6ac8b9a3a279
- 77fbe74247c2
- 7857ea93a011
- 7aebd6265a97
- 9a36525a8425
- a1698b43abeb
- c678f671e151
- cc64914b0cf4
- d1b97a5d5a8d
- d82d999fa716
- da2808112bb4
- da611a744112
- fa6c08064fc1
tool_panel_section_id: hca_sc_scanpy_tools
- name: scanpy_find_cluster
owner: ebi-gxa
revisions:
- 002f73dae0a7
- 15e8a4c60418
- 1e820072e8f1
- 2704d80b7e91
- 2784759ad631
- 2ccd9f9e2cd0
- 35caf3c27c91
- 36735850e461
- 455846afcc73
- 5a62843a2b9f
- 5e68e130fafe
- 621d7d7a605f
- 62d23f5d38f9
- 6a9e2be28b07
- 9e4f79e40b84
- ab7a3bb8a622
- ad6995afd2e6
- b456d129066d
- b531acda966c
- ce27ae8a36cd
- d19920419c78
- e232ea3fff07
- e4006a341f74
- ed07813a7266
- ee181563bae7
- fc4b3b46dc9d
tool_panel_section_id: hca_sc_scanpy_tools
- name: scanpy_find_markers
owner: ebi-gxa
revisions:
- 0a8e527d1517
- 0d63195a9b9f
- 0fc4e76c5c0d
- 1670af5eee46
- 23939bfeee92
- 377224a3cd1d
- 49653e680ea4
- 615a46c220f0
- 64259337506f
- 67fa4288eee5
- 7042ce140caa
- 71668dd2d47b
- 81c34e67f262
- 9fe7e2da8fe6
- a6a896082cd7
- af5e4efa9e66
- af9cf232d6c9
- bfdca1eb4548
- c18f446dcfbf
- c608fd80ec15
- cc776860fae1
- d8f5224005bb
- eb01a7e59e9a
- f00adc96e0bf
- f04dd4e5b6a7
- f0f78d29130f
- fb9bd74c32b0
tool_panel_section_id: hca_sc_scanpy_tools
- name: scanpy_find_variable_genes
owner: ebi-gxa
revisions:
- 0edb75c411a4
- 144c405d3ca4
- 1c59a010bb44
- 258e13397a8a
- 273faaa2bd69
- 2861ca3bfe4d
- 2bc42a6f092b
- 305d0cbe0ffd
- 321f1b073cbc
- 438a09194001
- 4667fe07bd68
- 5663eb6b965c
- 5c62f39aab8f
- 64dd8bb151e1
- '710530217502'
- 7558a3d8338e
- 7793c8284aa5
- 79da59a0b180
- 7a68f44c866b
- 84711701573e
- ae467daae2f7
- b089f4a55e6b
- d88a29e2eba6
tool_panel_section_id: hca_sc_scanpy_tools
- name: scanpy_normalise_data
owner: ebi-gxa
revisions:
- 059f8d2e8be1
- 1442daff0c7c
- 18ce7b88ff5d
- 1dda36e73482
- 28ab1cdd0cf5
- 28b1546857b0
- 3027cb62adbd
- 3636ec97f3af
- 3a4564b9d685
- 439f7f939d46
- 463d4fa8f5ec
- 47c747351d62
- 4bbb2179521c
- 6b97ffba31da
- 7852b823ad45
- 8d9c22419c56
- 9681ec095ed5
- 978bd87a87c2
- a97c37e0309a
- e541f264fad2
- f6a781314ca8
- f7322b68cc90
tool_panel_section_id: hca_sc_scanpy_tools
- name: scanpy_parameter_iterator
owner: ebi-gxa
revisions:
- 0387a2179f88
- 1a30a61effea
- 25e0b1fd2d05
- 328e7846309d
- 40feaaed47cf
- 4bb2ca8e2bd3
- 645f12f44a6d
- 73d43034c860
- 7c4d44c14ceb
- 81069608d570
- 93680e2ff8f4
- 99301e5feddc
- 9dbd170bec14
- a8c73996ac50
- ae4debc68f4a
- b9dd12ab0550
- bdd0e28e16bc
- c6d3a3609a8a
- ce09dd900257
- d4c9061c8fef
- d574549f9dee
- ec800d531617
- f0dd61087af3
- fb354a78d4ae
tool_panel_section_id: hca_sc_scanpy_tools
- name: scanpy_plot_embed
owner: ebi-gxa
revisions:
- 068c4bf0e0db
- 1be0fc4d8654
- 210026a1a50a
- 278dfcba81fd
- 35f6611fb8c3
- 452e0f19c2a2
- 56d22aa6cb3b
- 68e82882a8f9
- 7c601934578b
- 7d5c97823f8b
- 882f4671d686
- 99dd7baf9e23
- 9fafbfcdee0d
- a8ef4bc35839
- b2410da4e381
- bfb4d298d75f
- c591b2ffc2d7
- dba78f1681b1
- f8b5478a9fdf
tool_panel_section_id: hca_sc_scanpy_tools
- name: scanpy_plot_trajectory
owner: ebi-gxa
revisions:
- 0cb36b79741e
- 1bc31f0f3aea
- 1d0e587bdd60
- 2d00acd70129
- 2fe4b4cba312
- 3a00e9e50eb8
- 4e666c43b6e3
- 5dde9b3c169e
- 629ed290bf30
- 63cbe6d65e67
- 77985b89bd0a
- 8e2fc37c3e0c
- 9d746af31fe8
- c99f397434a3
- cb1992d1804b
- d3df472a21dc
- d8423c3f869d
- e8e54d565c92
- eb10fa649a7e
- f489ccdd423c
tool_panel_section_id: hca_sc_scanpy_tools
- name: seurat_plot
owner: ebi-gxa
revisions:
- 95d79f1134f0
tool_panel_section_id: hca_sc_scanpy_tools
- name: seurat_run_umap
owner: ebi-gxa
revisions:
- b9424c715a0d
tool_panel_section_id: hca_sc_scanpy_tools
- name: scanpy_read_10x
owner: ebi-gxa
revisions:
- 078aa23c9374
- 1b84ae7595ed
- 247e401d454f
- 287503c35cb4
- 30a139b5fcfb
- 3931e8e8d678
- 3faf577f3e40
- 3ffd959f55f4
- 572b6e3b2aff
- 72cf1c8f5870
- 741d50b6dc78
- 7757f4b43174
- 9afcfcd1d215
- af6ecb5adcc1
- b021ae78ccb4
- bd4a491baf39
- c2fe8568f35f
- c8391a25dee3
- ce87cc7d65ea
- cf55e0e462da
- d253d69ff19f
- d92e6f12b790
tool_panel_section_id: hca_sc_scanpy_tools
- name: scanpy_regress_variable
owner: ebi-gxa
revisions:
- 0bab2ae44e7a
- 1200b55768ce
- 1ad1d9713563
- 2131ec9d52e2
- 2cf10c8c094d
- 3229d550f325
- 36daab33aecf
- 59d3ce1cfaa8
- 63e18d37228d
- 6acb47a58ac7
- 866ea2391985
- 91157b3432df
- 99c7380fae41
- 9e92447122a6
- b8f8890d95e4
- bd65279c7ddc
- d18ed15697bb
- e51380afa61c
- eed0986f53c7
tool_panel_section_id: hca_sc_scanpy_tools
- name: scanpy_run_diffmap
owner: ebi-gxa
revisions:
- 0580285b842e
- 1709957891e5
- 3f8d10b43598
- 4a53eb16b926
- 5603d3e55053
- 6586bfb21f41
- 6a6364b488db
- 713e94af9d6c
- 722ba62d7bb4
- 79cc06a557b0
- 7abe27a3866e
- 83baf6001a10
- 8e45c89adab2
- 900b3c31fd3a
- a05d2553484e
- afec1d52b87d
- c869331377bf
- e2ca1846080f
- e3123e51e781
- f10df597ed6d
tool_panel_section_id: hca_sc_scanpy_tools
- name: scanpy_run_dpt
owner: ebi-gxa
revisions:
- 03921aa8b29c
- 0e264c40fd06
- 12f67b0c1a94
- 1ab80fc6f667
- 202e28c59b59
- 299aca1029a1
- 2e06dabb3f2f
- 2f569aa8c920
- 5c54f3eb81d3
- 730d098a9f23
- 8a6860957c84
- 8ca1de77945e
- b1cb0c2831ea
- b2b2211da550
- c5a313b4337c
- d49523477607
- e274c2d06e53
- e82f42730fa1
- ea6bea16d0e2
- eb764ec05bb9
tool_panel_section_id: hca_sc_scanpy_tools
- name: scanpy_run_fdg
owner: ebi-gxa
revisions:
- 02793592e36a
- 07e0163086ad
- 14866357fbec
- 2ab5f5682507
- 425f2e046231
- 4722394f6af9
- 4c38558f0e7c
- 5bcec1fc4c7f
- 5d2c8acd2ae4
- 65c3ec07502b
- 6c40cc3e9dc0
- 7c6581b57ad4
- 885681d258b4
- 932e99b4dc5f
- a6190ae4fe16
- a82c905e2c26
- be019b069e31
- cef0ddd01875
- d929261bc28c
- f5bc7d1b32fd
tool_panel_section_id: hca_sc_scanpy_tools
- name: scanpy_run_paga
owner: ebi-gxa
revisions:
- 0488639e0e8a
- 211fe30d83be
- 4e7d55438238
- 69df3f287281
- 6b7a5d15a89b
- 6d4f88995e40
- 7ea07327147a
- 9dcd0b02d686
- a12f0d1b0fac
- a9e541954c1c
- b2768cae00a1
- b9ccaa957667
- d811772b94d7
- eba43c4d86b9
- ed2231b3edff
- f49758aa29e5
- f6148c49ff8b
- fa114efdb1e7
- fdaf18739b31
tool_panel_section_id: hca_sc_scanpy_tools
- name: scanpy_run_pca
owner: ebi-gxa
revisions:
- 04bdc69f00d7
- 0cf90e01d9f8
- 1618435e2a33
- 2dd53b944e78
- 3ee74b58c72d
- 4428dba93375
- 4a54b92af339
- 4fbc4b97090f
- 5063cd7f8c89
- 544d45fca48f
- 59028945c857
- 7798c318e7d7
- 7ee4417b24cc
- 8b4dae3748d3
- 988edd5fa902
- aee7b7f9cae3
- c990e40fbd46
- ce93e630b55a
- da13741428bf
- f0eecf608220
- f7ce9ed8a4f3
- fe900f147809
tool_panel_section_id: hca_sc_scanpy_tools
- name: scanpy_run_tsne
owner: ebi-gxa
revisions:
- 091e5d709ef7
- 181d61d2f3cd
- 2c6340dad187
- 2e74fd7b5f45
- 3589dfaef3f6
- 384cacc40611
- 3fb53f5e46ea
- 45674f057a31
- 5d92e38da1ea
- 64cd33540fee
- 753bf41cc2e3
- 8b0d6f6f44c8
- 8eff7ec034e3
- 9d2b6c6f9e07
- a597590ccf6c
- abdb61e4afa3
- af9b447bcde8
- b5e1939cc155
- b946c0c60d4c
- c4a20a57d825
- d525452f8f2f
- e61ba8b05578
- f6f189ce4ebc
- fe727a9496ea
tool_panel_section_id: hca_sc_scanpy_tools
- name: scanpy_run_umap
owner: ebi-gxa
revisions:
- 01750c193a83
- 0ac2f9f2313b
- 0da35cd42e7c
- 0f98603d0116
- 10893b1647ff
- 135e8cacb57e
- 3a7b97ddf3ff
- 3bd1152dd854
- 41f6078040da
- 447c4a7e8561
- 62c31dc2e5d5
- 676e2964920a
- 767a675b5254
- 88c1516e25e0
- 9984f48961d0
- a5731f913326
- abae3d11d920
- b282c349bd67
- bd4a244faeb8
- c111d7d04f0b
- e31937baa330
- ea91cfd0444e
- fe562424a0a6
tool_panel_section_id: hca_sc_scanpy_tools
- name: scanpy_scale_data
owner: ebi-gxa
revisions:
- 1bb1d4419c48
- 22f2957da902
- 29a69127061f
- 33d809001520
- 3a0d4bebabc5
- 4c73b070cbff
- 4cc9362782b4
- 4f04a735b26d
- 5605f8452eb3
- 796cd21bb304
- 87a02d83b6f5
- 95887cb6859f
- 9664a6c00fd1
- 96b851e96dd0
- 9acb5f068e6b
- bf30bd6355da
- c6e52529260e
- c8f196ccf34a
- e2d0dc8a50ca
- ea8fd43b7e1e
- eabf8e76e007
- f86b2c3bc459
tool_panel_section_id: hca_sc_scanpy_tools
- name: scanpy_integrate_combat
owner: ebi-gxa
revisions:
- 0752a5c8a9da
- 0b851815e0b6
- 27c74c83eae5
- 2de673ef8c13
- 352cdf3b2f75
- 3c2ff50cef4a
- 3c47bc560688
- 5c25b8a985e8
- 7322e7583847
- 7a573108f5f4
- 9f995f5e855a
- c6611adc8f4a
tool_panel_section_id: hca_sc_scanpy_tools
- name: scanpy_integrate_harmony
owner: ebi-gxa
revisions:
- 14076b38c3bb
- 18e01a7c55c6
- 1d92cea73607
- 2cef3539f420
- 3111bcf039dd
- 3f61bf17ca50
- 6903bc865d63
- 739f68e3cbca
- bf824765919c
- c354af93f567
- c8eb5547846b
- ca0c7251e415
tool_panel_section_id: hca_sc_scanpy_tools
- name: scanpy_integrate_mnn
owner: ebi-gxa
revisions:
- 1504334ef569
- 3ba9371733a2
- 4951ff9f43db
- 5bb009f95e03
- 94697510d55f
- 9724e5ffaa1f
- 9a2f72d7dbd2
- b202e078a83f
- dc7fa97154f1
- e9788746e0f6
- eb30e34367b1
- ff6decc0f432
tool_panel_section_id: hca_sc_scanpy_tools
- name: scanpy_integrate_bbknn
owner: ebi-gxa
revisions:
- 032d52b00b7c
- 12fc7e093094
- 1fb88fd7dce5
- 26805c747e15
- 3803efa11152
- 3d9322fd5716
- 6e903e287858
- 89eef46fce58
- 932f0f51074c
- 9d76c3d6dff6
- c9da9192eee5
- de8643b6e419
tool_panel_section_id: hca_sc_scanpy_tools
- name: scanpy_plot_scrublet
owner: ebi-gxa
revisions:
- 021a6e341dcf
- 2d3b13bb704a
- 4276a6dea8d1
- 6f5509cf3176
tool_panel_section_id: hca_sc_scanpy_tools
- name: scanpy_multiplet_scrublet
owner: ebi-gxa
revisions:
- 2f9517a24c73
- 53ce0e336840
- 8ca3ab8300ce
- b8126b3bf5d0
- fadc4fbf8025
tool_panel_section_id: hca_sc_scanpy_tools
- name: scanpy_integrate_bbknn
owner: ebi-gxa
revisions:
- 032d52b00b7c
- 12fc7e093094
- 1fb88fd7dce5
- 26805c747e15
- 3803efa11152
- 3d9322fd5716
- 6e903e287858
- 89eef46fce58
- 932f0f51074c
- 9d76c3d6dff6
- c9da9192eee5
- de8643b6e419
tool_panel_section_id: hca_sc_scanpy_tools
- name: seurat_create_seurat_object
owner: ebi-gxa
revisions:
- f8865ae30723
tool_panel_section_id: hca_sc_seurat_tools
- name: seurat_dim_plot
owner: ebi-gxa
revisions:
- 316623eb59bd
- 64174ac50d78
- 6e26ee99fdfc
- cfc3d8ee3a64
- daeca8f7a26e
- e7e01a7fea38
tool_panel_section_id: hca_sc_seurat_tools
- name: seurat_export_cellbrowser
owner: ebi-gxa
revisions:
- 249392cd0d99
- 36221da750e8
- 80eec773c961
- 8c2b1d2659df
- a18f8d34524a
- e7d338f8c4fc
tool_panel_section_id: hca_sc_seurat_tools
- name: seurat_filter_cells
owner: ebi-gxa
revisions:
- 30982e805f8c
- 3c41916bc2ad
- c1848daebad1
- c4b984347138
- cd9f564bd63f
- ebf7286c8b97
tool_panel_section_id: hca_sc_seurat_tools
- name: seurat_find_clusters
owner: ebi-gxa
revisions:
- 11a008daee84
- 8ea738667314
- 8ed848ef86fd
- bdabb6af06e4
- d541e9e62beb
- eefaffdcd441
tool_panel_section_id: hca_sc_seurat_tools
- name: seurat_find_markers
owner: ebi-gxa
revisions:
- 07fc9f4841b3
- 203dcb6f2faf
- 3dd20b758756
- 7895b4bb6247
- a1842dbe01cd
- fde95fe95f15
tool_panel_section_id: hca_sc_seurat_tools
- name: seurat_find_variable_genes
owner: ebi-gxa
revisions:
- 051953328516
- 5a79dc04aafe
- 5be60722113a
- 948fc0276b4f
- a56efad05337
- a6077346f869
tool_panel_section_id: hca_sc_seurat_tools
- name: seurat_normalise_data
owner: ebi-gxa
revisions:
- 3f49bc9c9213
- 48174ec556de
- 619fead82856
- 778e1a98055f
- a835b38e389f
- c5d4fce10c45
tool_panel_section_id: hca_sc_seurat_tools
- name: seurat_read10x
owner: ebi-gxa
revisions:
- 1b8566f3c1d0
- 265dcc5bc1e8
- 301cf1b4b43d
- 893ea1e1eed3
- 948ce48561f9
- f5db0e853f57
tool_panel_section_id: hca_sc_seurat_tools
- name: seurat_run_pca
owner: ebi-gxa
revisions:
- 3fd59cdcb477
- 8ded486b0014
- 9547ebb03f6f
- a54f3400a885
- c4607a42113e
- df80f3d2f9d4
tool_panel_section_id: hca_sc_seurat_tools
- name: seurat_run_tsne
owner: ebi-gxa
revisions:
- 050fe6894b74
- 0db997e4a81d
- 13a27436f8ee
- 2d294978b152
- 3aea769deab1
- 8d9ceaec2c7f
tool_panel_section_id: hca_sc_seurat_tools
- name: seurat_scale_data
owner: ebi-gxa
revisions:
- 1656179f8e7c
- 3d0bfc2a233e
- 4147dc085d45
- 5e9ba303f9e1
- 6166efaeb4a6
- d2f6eac0ad42
tool_panel_section_id: hca_sc_seurat_tools
- name: seurat_find_neighbours
owner: ebi-gxa
revisions:
- 262943cd4821
- 4fff8ad1c76d
- 99d628557c47
- ab622ffd7c7f
- ba897c57bdd9
tool_panel_section_id: hca_sc_seurat_tools
- name: monocle3_create
owner: ebi-gxa
revisions:
- 2e446b0cb437
- 46a523dc303f
- 5a4b2fcd04d1
- 75340a5e5fb0
- a34f243f55a4
- ada68a9d0aec
tool_panel_section_id: hca_sc_monocle3_tools
- name: monocle3_diffexp
owner: ebi-gxa
revisions:
- a7d4f80d1265
- c0441ea8f37a
- c5665e286bcf
- d333006ef72a
- d43a608d14ac
- f91ddb6bc4ff
tool_panel_section_id: hca_sc_monocle3_tools
- name: monocle3_learngraph
owner: ebi-gxa
revisions:
- 17e74fba97fd
- 5f877012f7af
- 6b6b5a6d4021
- 710d112ee525
- 8ec85828b6e6
- 98e99ab36505
tool_panel_section_id: hca_sc_monocle3_tools
- name: monocle3_ordercells
owner: ebi-gxa
revisions:
- 3e77dc421569
- 5520da33a868
- 762c57e35238
- a14bd9053e2b
- e17c3123cdb5
- f58c4eb5446d
tool_panel_section_id: hca_sc_monocle3_tools
- name: monocle3_partition
owner: ebi-gxa
revisions:
- 426e1a869cb3
- 60cedaee808d
- 92ca41fbc123
- b253a59cbb98
- be84f9c3a2dd
- d98b4705eb4c
tool_panel_section_id: hca_sc_monocle3_tools
- name: monocle3_plotcells
owner: ebi-gxa
revisions:
- 016c39d243fb
- 3e737c810a54
- 896359db6339
- 91980addce5e
- ad64e2d368d6
- ef2dc754709c
tool_panel_section_id: hca_sc_monocle3_tools
- name: monocle3_preprocess
owner: ebi-gxa
revisions:
- 0276a57983e8
- 0869b0264af1
- 181ef11cba9d
- 273d11a83e42
- 384b9bcf2807
- c150370b514c
tool_panel_section_id: hca_sc_monocle3_tools
- name: monocle3_reducedim
owner: ebi-gxa
revisions:
- 004a86dffd79
- 82cc10768c74
- 8900e2a18603
- 89aea3f27ed2
- 98f4918eee70
- 9e59e242ed63
tool_panel_section_id: hca_sc_monocle3_tools
- name: monocle3_topmarkers
owner: ebi-gxa
revisions:
- a4ab4af54b1a
- bc2df96ef963
tool_panel_section_id: hca_sc_monocle3_tools
- name: run_sccaf
owner: ebi-gxa
revisions:
- 647d34f125bc
- ca26d4b4b02c
tool_panel_section_id: hca_sc_sccaf_tools
- name: sccaf_asses
owner: ebi-gxa
revisions:
- 37a4c22f600b
- 95670267a5b6
tool_panel_section_id: hca_sc_sccaf_tools
- name: sccaf_asses_merger
owner: ebi-gxa
revisions:
- 933fad89b50a
- 99d15ded4d5f
tool_panel_section_id: hca_sc_sccaf_tools
- name: sccaf_regress_out
owner: ebi-gxa
revisions:
- 5ef0610e9f50
tool_panel_section_id: hca_sc_sccaf_tools
- name: scmap_preprocess_sce
owner: ebi-gxa
revisions:
- 10c060627ef9
- 62513698ee34
- 80d97bdbfc7b
- b1bc3cb14097
tool_panel_section_id: hca_sc_scmap_tools
- name: scmap_index_cell
owner: ebi-gxa
revisions:
- 0f5e46b0981a
- 11b4b9b85b9c
- 17b3d7e04b3c
- 441df83ffc7c
- 5593b0744de9
- 640982866dfe
- 7c3f9606ed0a
- c17b3c6c1e31
- d9f79a39b39d
- dd0b44bd359a
- dd2a84734b87
tool_panel_section_id: hca_sc_scmap_tools
- name: scmap_index_cluster
owner: ebi-gxa
revisions:
- 1949832b448c
- 314f21a351ea
- 38c6a98c7c60
- 4696224064ff
- 4ff68faee6e1
- 63f1a27dce34
- 9b60d5972dbd