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CHANGELOG.md

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  • Version 1.5.0:
    • Major release. Restructure the code. Remove Dendropy folder and many redundant files. Activate installation by Anaconda.
  • Version 1.4.0:
    • Major release. Allow calibrations for internal nodes and allow missing sampling times for leaves, hard constraints only. Requires a unique label for each node; sampling times / calibration points are identified by node labels.
  • Version 1.3.1:
    • Added zero-length and verbose options. Remove options for LSD and LF. Remove options for scaling. Remove cvxpy requirement.
  • Version 1.3.0:
    • Pseudo-count in wLogDate weighting
  • Version 1.2.0:
    • Apply square-root scaling strategy
  • Version 1.1.0:
    • Add -e option to remove short terminal branches. Add option to run LF and LSD objective. Use cvxpy with Mosek for LF
  • Version 1.0.0:
    • The version submitted to RECOMB 2019.