migrate job template to use build_tools virtual environment

vub-hpc · Jan 30, 2025 · 8f4c78d · 8f4c78d
1 parent dd0faaf
commit 8f4c78d
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Showing 3 changed files with 6 additions and 12 deletions.
diff --git a/src/build_tools/jobtemplate.py b/src/build_tools/jobtemplate.py
@@ -31,20 +31,18 @@
 #SBATCH --gpus-per-node=${gpus}
 #SBATCH --partition=${partition}
 
-test -n "$$PREFIX_EB" || { echo "ERROR: environment variable PREFIX_EB not set"; exit 1; }
+# activate build_tools virtual environment
+source "$$VSC_SCRATCH_VO_USER/EB4/eb4env/bin/activate"
 
 # set environment
 export BUILD_TOOLS_LOAD_DUMMY_MODULES=1
 export LANG=${langcode}
-export PATH=$$PREFIX_EB/easybuild-framework:$$PATH
-export PYTHONPATH=$$PREFIX_EB/easybuild-easyconfigs:$$PREFIX_EB/easybuild-easyblocks:$$PREFIX_EB/easybuild-framework:$$PREFIX_EB/vsc-base/lib
 
 SUBDIR_MODULES="modules"
 SUBDIR_MODULES_BWRAP=".modules_bwrap"
 SUFFIX_MODULES_PATH="collection"
 SUFFIX_MODULES_SYMLINK="all"
 
-
 # make build directory
 if [ -z $$SLURM_JOB_ID ]; then
     export TMPDIR=${tmp}/$$USER/

diff --git a/tests/input/build_job_01.sh b/tests/input/build_job_01.sh
@@ -8,20 +8,18 @@
 #SBATCH --gpus-per-node=0
 #SBATCH --partition=skylake_mpi
 
-test -n "$PREFIX_EB" || { echo "ERROR: environment variable PREFIX_EB not set"; exit 1; }
+# activate build_tools virtual environment
+source "$VSC_SCRATCH_VO_USER/EB4/eb4env/bin/activate"
 
 # set environment
 export BUILD_TOOLS_LOAD_DUMMY_MODULES=1
 export LANG=C
-export PATH=$PREFIX_EB/easybuild-framework:$PATH
-export PYTHONPATH=$PREFIX_EB/easybuild-easyconfigs:$PREFIX_EB/easybuild-easyblocks:$PREFIX_EB/easybuild-framework:$PREFIX_EB/vsc-base/lib
 
 SUBDIR_MODULES="modules"
 SUBDIR_MODULES_BWRAP=".modules_bwrap"
 SUFFIX_MODULES_PATH="collection"
 SUFFIX_MODULES_SYMLINK="all"
 
-
 # make build directory
 if [ -z $SLURM_JOB_ID ]; then
     export TMPDIR=/tmp/eb-test-build/$USER/

diff --git a/tests/input/build_job_02.sh b/tests/input/build_job_02.sh
@@ -8,20 +8,18 @@
 #SBATCH --gpus-per-node=1
 #SBATCH --partition=ampere_gpu
 
-test -n "$PREFIX_EB" || { echo "ERROR: environment variable PREFIX_EB not set"; exit 1; }
+# activate build_tools virtual environment
+source "$VSC_SCRATCH_VO_USER/EB4/eb4env/bin/activate"
 
 # set environment
 export BUILD_TOOLS_LOAD_DUMMY_MODULES=1
 export LANG=C
-export PATH=$PREFIX_EB/easybuild-framework:$PATH
-export PYTHONPATH=$PREFIX_EB/easybuild-easyconfigs:$PREFIX_EB/easybuild-easyblocks:$PREFIX_EB/easybuild-framework:$PREFIX_EB/vsc-base/lib
 
 SUBDIR_MODULES="modules"
 SUBDIR_MODULES_BWRAP=".modules_bwrap"
 SUFFIX_MODULES_PATH="collection"
 SUFFIX_MODULES_SYMLINK="all"
 
-
 # make build directory
 if [ -z $SLURM_JOB_ID ]; then
     export TMPDIR=/tmp/eb-test-build/$USER/