diff --git a/_sources/computing/conda.md b/_sources/computing/conda.md index efccda8..3f03599 100644 --- a/_sources/computing/conda.md +++ b/_sources/computing/conda.md @@ -41,7 +41,7 @@ This will install conda to your home directory `~/miniconda3`. To confirm it's successfully installed, do `$ conda --version` , and you will see something like `conda 4.14.0`. ```{note} -This works for Apple M1 chip. For more installing options (e.g. for Intel chip), see the [miniconda doc](https://docs.conda.io/en/latest/miniconda.html). +This works for Apple M series chips. For more installing options (e.g. for Intel chip), see the [miniconda doc](https://docs.conda.io/en/latest/miniconda.html). ``` ::: @@ -67,13 +67,11 @@ You can add the above line to your `~/.bashrc`. Then it will be automatically lo ```{warning} This is not needed on your Mac; skip it. - -This is optional on HPE DSI clusters, but it is good to do it. ``` ### Changing environment directory -By default, if we create a new environment, it will be stored in the `$HOME` directory (e.g. `/home//.conda/envs`). +On HPE DSI clusters, by default, if we create a new environment, it will be stored in the `$HOME` directory (e.g. `/home//.conda/envs`). Conda environments can sometimes get quite big, but each of us only has a quota of 10G for `$HOME`. This can easily lead to out-of-quota problem. We can change the default environment directory to avoid this. You should have access to our group project directory, i.e. `/project/wen`, which has a much larger disk quota. We will configure conda to store environments there. diff --git a/computing/conda.html b/computing/conda.html index d364adc..75ececf 100644 --- a/computing/conda.html +++ b/computing/conda.html @@ -484,7 +484,7 @@

Installation$ conda --version , and you will see something like conda 4.14.0.

Note

-

This works for Apple M1 chip. For more installing options (e.g. for Intel chip), see the miniconda doc.

+

This works for Apple M series chips. For more installing options (e.g. for Intel chip), see the miniconda doc.

@@ -507,11 +507,10 @@

Changing default conda settings

Warning

This is not needed on your Mac; skip it.

-

This is optional on HPE DSI clusters, but it is good to do it.

Changing environment directory#

-

By default, if we create a new environment, it will be stored in the $HOME directory (e.g. /home/<username>/.conda/envs). +

On HPE DSI clusters, by default, if we create a new environment, it will be stored in the $HOME directory (e.g. /home/<username>/.conda/envs). Conda environments can sometimes get quite big, but each of us only has a quota of 10G for $HOME. This can easily lead to out-of-quota problem. We can change the default environment directory to avoid this.

You should have access to our group project directory, i.e. /project/wen, which has a much larger disk quota. We will configure conda to store environments there.

First, create a directory under your username.

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workflow": [[1, "running-a-workflow"]], "Next step": [[1, "next-step"]], "More information": [[1, "more-information"], [3, "more-information"], [5, "more-information"], [12, "more-information"], [14, "more-information"], [15, "more-information"]], "Database": [[2, "database"]], "Getting new databases": [[2, "getting-new-databases"]], "Connecting to MongoDB": [[2, "connecting-to-mongodb"]], "Fireworks": [[3, "fireworks"]], "Installing": [[3, "installing"]], "Configuration": [[3, "configuration"]], "FW_config.yaml": [[3, "fw-config-yaml"]], "my_launchpad.yaml": [[3, "my-launchpad-yaml"]], "my_qadapter.yaml": [[3, "my-qadapter-yaml"]], "Running a flow": [[3, "running-a-flow"]], "Initializing launchpad": [[3, "initializing-launchpad"]], "Creating a workflow": [[3, "creating-a-workflow"]], "Launching a workflow": [[3, "launching-a-workflow"]], "Monitoring your workflow": [[3, "monitoring-your-workflow"]], "High Throughput": [[4, "high-throughput"]], "HPE DSI": [[5, "hpe-dsi"]], "Getting an 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