Enable --interactive flag

xin-huang · Jul 16, 2024 · fcceaf1 · fcceaf1
1 parent 963d7df
commit fcceaf1
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Showing 2 changed files with 4 additions and 11 deletions.
diff --git a/dadi_cli/Plot.py b/dadi_cli/Plot.py
@@ -50,7 +50,7 @@ def plot_single_sfs(
         dadi.Plotting.plot_1d_fs(fs, show=show)
     if len(fs.sample_sizes) == 2:
         fig = plt.figure(219033)
-        dadi.Plotting.plot_single_2d_sfs(fs, vmin=vmin)#, show=show)
+        dadi.Plotting.plot_single_2d_sfs(fs, vmin=vmin, show=show)
     if len(fs.sample_sizes) == 3:
         try:
             fig = plt.figure(219033, figsize=(10,4))
@@ -297,22 +297,22 @@ def plot_fitted_dfe(
             projections = ns
         fs = fs.project(projections)
         model = model.project(projections)
-        dadi.Plotting.plot_1d_comp_Poisson(model, fs)
+        dadi.Plotting.plot_1d_comp_Poisson(model, fs, show=show)
     if len(ns) == 2:
         if projections == None:
             projections = ns
         fs = fs.project(projections)
         model = model.project(projections)
         dadi.Plotting.plot_2d_comp_Poisson(
-            model, fs, vmin=vmin, resid_range=resid_range
+            model, fs, vmin=vmin, resid_range=resid_range, show=show
         )
     if len(ns) == 3:
         if projections == None:
             projections = ns
         fs = fs.project(projections)
         model = model.project(projections)
         dadi.Plotting.plot_3d_comp_Poisson(
-            model, fs, vmin=vmin, resid_range=resid_range
+            model, fs, vmin=vmin, resid_range=resid_range, show=show
         )
     if len(ns) > 3:
         raise ValueError("dadi-cli does not support comparing fs and model with more than three populations")

diff --git a/dadi_cli/parsers/plot_parsers.py b/dadi_cli/parsers/plot_parsers.py
@@ -197,11 +197,4 @@ def add_plot_parsers(subparsers: argparse.ArgumentParser) -> None:
         required=False,
         help="Display plots in matplotlib window.",
     )
-    parser.add_argument(
-        "--show",
-        default=False,
-        action="store_true",
-        required=False,
-        help="Display plots in matplotlib window.",
-    )
     parser.set_defaults(runner=_run_plot)