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Bioconductor Release v3.13

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@zhengxwen zhengxwen released this 11 Jun 06:13
· 40 commits to master since this release
v1.26.0
accb463

CHANGES IN VERSION 1.24.0

  • definition of IBS in the snpgdsIBS help file

CHANGES IN VERSION 1.22.0

  • 'allow.fork=TRUE' is the default in snpgdsOpen() since v1.21.2
  • add print.snpgdsPCAClass, print.snpgdsEigMixClass, print.snpgdsPCASNPLoadingClass, print, snpgdsEigMixSNPLoadingClass, print.snpgdsIBDClass, print.snpgdsDissClass, print.snpgdsIBSClass
  • fix a Win32 compiler issue with gcc-4.9
  • update snpgdsBED2GDS() with comment.char=""

CHANGES IN VERSION 1.20.1

  • Bug fix: eigenvalues and TraceXTX are correctly calculated in snpgdsPCA(, algorithm="randomized")

CHANGES IN VERSION 1.20.0

  • a leading tilde in the file path is allowed in snpgdsGDS2BED()
  • change the file name "vignettes/SNPRelateTutorial.Rmd" to "vignettes/SNPRelate.Rmd", so vignette("SNPRelate") can work directly

CHANGES IN VERSION 1.18.1

  • support long vector in snpgdsIBDSelection()
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