Merge pull request #673 from zwicker-group/requirements

Add pydot to requirements and update ignore rules in linter configuration

Author: david-zwicker

docs/requirements.txt

@@ -4,6 +4,7 @@ h5py>=2.10
 pandas>=2
 Pillow>=7.0
 py-modelrunner>=0.19
+pydot>=3
 Sphinx>=4
 sphinx-autodoc-annotation>=1.0
 sphinx-gallery>=0.6

scripts/_templates/_pyproject.toml

@@ -82,7 +82,7 @@ select = [
     "SIM", # flake8-simplify
     "PTH", # flake8-use-pathlib
 ]
-ignore = ["B007", "B027", "B028", "SIM108", "ISC001", "PT006", "PT011", "RET504", "RET505", "RET506"]
+ignore = ["A005", "B007", "B027", "B028", "SIM108", "ISC001", "PT006", "PT011", "RET504", "RET505", "RET506"]
 
 [tool.ruff.lint.isort]
 section-order = ["future", "standard-library", "third-party", "first-party", "self", "local-folder"]

scripts/create_requirements.py

@@ -158,6 +158,7 @@ def line(self, relation: str = ">=") -> str:
     Requirement(name="sphinx-autodoc-annotation", version_min="1.0", docs_only=True),
     Requirement(name="sphinx-gallery", version_min="0.6", docs_only=True),
     Requirement(name="sphinx-rtd-theme", version_min="1", docs_only=True),
+    Requirement(name="pydot", version_min="3", docs_only=True),
     Requirement(name="Pillow", version_min="7.0", docs_only=True),
     Requirement(name="utilitiez", version_min="0.3", docs_only=True, tests_only=True),
     # for tests only